PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna00296.1-v1.0-hybrid
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family C3H
Protein Properties Length: 151aa    MW: 16756.7 Da    PI: 7.8575
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna00296.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH25.13.1e-085779527
                             --SGGGGTS--TTTTT-SS-SSS CS
                  zf-CCCH  5 lCrffartGtCkyGdrCkFaHgp 27
                              C++f  tG+C+yGd Ck+ H++
  mrna00296.1-v1.0-hybrid 57 VCNRFVNTGFCQYGDACKYFHPK 79
                             7********************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.75E-13461No hitNo description
PfamPF062202.3E-6538IPR013085Zinc finger, U1-C type
PROSITE profilePS5010312.9535280IPR000571Zinc finger, CCCH-type
SMARTSM003560.00225479IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.37E-75681IPR000571Zinc finger, CCCH-type
PfamPF006425.0E-65779IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.3E-65778IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009001anatomyfruit
PO:0007010developmental stagewhole plant fruit ripening stage
PO:0007027developmental stagewhole plant fruit formation stage 70% to final size
Sequence ? help Back to Top
Protein Sequence    Length: 151 aa     Download sequence    Send to blast
MPLGKYDCEY CNKQFQDTPY ARRRHLQSLQ HLRAKAQWFD SFKDPNDAYA QSLGRGVCNR  60
FVNTGFCQYG DACKYFHPKN NQQNTITQGA SGVTDNSQSS TIQGNQMVAG SSLPDVVVRD  120
NMGMSWGNLP PSLMPPPEGG YPPLPFVDWG *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004302306.11e-111PREDICTED: zinc finger CCCH domain-containing protein 3
SwissprotQ0JP114e-43C3H3_ORYSJ; Zinc finger CCCH domain-containing protein 3
TrEMBLM5WL087e-91M5WL08_PRUPE; Uncharacterized protein
STRINGVIT_14s0060g00610.t018e-74(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF119592833
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26749.13e-25C3H family protein